MLST(Multi-Locus Sequence Typing)是一种基于核酸序列的细菌分型技术,主要用于微生物种群中菌株的分型鉴定。MLST通过细菌内保守但具有足够多态性的基因座(loci)(通常是6到10个)的核苷酸序列来区分不同的菌株。本工具用于批量进行基因组的MLST分型,小工具会自动匹配物种分类。将需要分型的基因组文件保存到同一个文件夹中,将其压缩为zip格式进行提交。
示例文件:
将需要分型的基因组文件保存到同一个文件夹中,将其压缩为zip格式进行提交。
小工具结果:
支持的物种类型:
aactinomycetemcomitans | hinfluenzae | ppentosaceus |
abaumannii | hparasuis | pputida |
achromobacter | hsuis | psalmonis |
aeromonas | kaerogenes | ranatipestifer |
aphagocytophilum | kingella | rhodococcus |
arcobacter | klebsiella | sagalactiae |
bbacilliformis | koxytoca | saureus |
bcc | leptospira | sbsec |
bcereus | liberibacter | scanis |
bfragilis | listeria | schromogenes |
bhenselae | llactis_phage | sdysgalactiae |
blicheniformis | lsalivarius | senterica_achtman |
bordetella | mabscessus | sepidermidis |
borrelia | magalactiae | sgallolyticus |
bpseudomallei | manserisalpingitidis | shaemolyticus |
brachyspira | mbovis | shewanella |
brucella | mcanis | shominis |
bsubtilis | mcaseolyticus | sinorhizobium |
bwashoensis | mcatarrhalis_achtman | smaltophilia |
campylobacter | mflocculare | spneumoniae |
campylobacter_nonjejuni | mgallisepticum | spseudintermedius |
cbotulinum | mhaemolytica | spyogenes |
cdifficile | mhominis | ssuis |
cfreundii | mhyopneumoniae | staphlugdunensis |
chlamydiales | mhyorhinis | sthermophilus |
cmaltaromaticum | miowae | streptomyces |
cperfringens | mplutonius | streptothermophilus |
cronobacter | mpneumoniae | suberis |
csepticum | msciuri | szooepidemicus |
diphtheria | msynoviae | taylorella |
dnodosus | mycobacteria | tenacibaculum |
ecloacae | neisseria | tpallidum |
ecoli | oralstrep | ureaplasma |
ecoli_achtman | orhinotracheale | vcholerae |
edwardsiella | otsutsugamushi | vibrio |
efaecalis | pacnes | vparahaemolyticus |
efaecium | paeruginosa | vtapetis |
fpsychrophilum | pdamselae | vvulnificus |
gallibacterium | pfluorescens | wolbachia |
geotrichum | pgingivalis | xfastidiosa |
hcinaedi | plarvae | ypseudotuberculosis_achtman |
helicobacter | pmultocida | yruckeri |
当前版本为1.0版本,上架时间为:2025-05-27